2016 [Python, R, C#] MicroRNA Cleavage Site Clustering System
Jan 2016 – Nov 2016 Project descriptionThis system pre-processes the raw biological data, making them available for clustering, then applies different data dimensionality reduction algorithms and clustering algorithms. Role Only Developer IDE Visual Studio 2015, R-Studio Data mining tools and packages SPSS Modeler 15, Scikit-Learn(Python), CLUE(R Package) Data Mining Algorithms PCA, feature selection, clustering, k-means, mean-shift, k-medoids, hierarchical clustering, ensemble clustering Biology tools ViennaRNA, RsRobot, Targetfinder String Searching Algorithms Local alignment, Global alignment, Boyer-Moore algorithm, pigeonhole principle, k-mer. Frameworks CSV2Entity(C# by myself) Version Control(Github) https://github.com/juwikuang/Dissertation